# Phylogenetics

Created: | 2007-11-28 14:48 |
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Institution: | Isaac Newton Institute for Mathematical Sciences |

Description: | Phylogenetics is the reconstruction and analysis of trees and networks to describe and understand the evolution of species, populations and individuals. It is widely used in molecular biology and other areas of classification (such as linguistics), and has both led to and benefited from the development of new mathematical, statistical and computational techniques. Although the foundations of phylogenetics were laid down many decades ago, it is currently experiencing an exciting renaissance due to the wealth and types of biological data that are now becoming available. This programme will bring together key researchers in phylogenetics and related areas to further develop this important area of mathematical biology.
The main themes that will be worked on during this programme are new data types in phylogenetics; modelling reticulate evolution; constructing large trees; probabilistic models of evolution; and phylogenetic combinatorics. These themes provide a rich source of mathematical problems in areas such as combinatorics, graph theory, probability theory, topology, and algebraic geometry. Solutions to these problems will provide new insights to questions that are central to contemporary evolutionary biology. EVENTS: - Spitalfields Day - Yggdrasil: Reconstructing the Tree of Life http://www.newton.ac.uk/programmes/PLG/PLG_Spitalfields.html - Current Challenges and Problems in Phylogenetics http://www.newton.ac.uk/programmes/PLG/plgw01.html - Future Directions in Phylogenetic Methods and Models http://www.newton.ac.uk/programmes/PLG/plgw03.html - Phylogenetics: New data, new Phylogenetic challenges http://www.newton.ac.uk/programmes/PLG/plgw05.html |

# Media items

This collection contains 126 media items.

### Media items

#### 10 Men and 1 woman?

von Haeseler, A (MFPL, Vienna)

Wednesday 19 December 2007, 11:10-11:30

Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 14 Jan 2008

#### A genealogical approach to studying asexuality

Song, Y (California)

Friday 21 December 2007, 10:40-11:00

PLGw03 - Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Wed 16 Jan 2008

#### A generalization of Stirling numbers and distribution of phylogenetic trees

Czabarka, E (South Carolina)

Thursday 23 June 2011, 11:50-12:10

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 27 Jun 2011

#### A Lie algebraic classification of continuous-time Markov models

Sumner, J (Tasmania)

Thursday 23 June 2011, 11:30-11:50

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 27 Jun 2011

#### A phylogenetic definition of structure and further animations on the sequence space

Gesell, T (MFPL, Vienna )

Thursday 20 December 2007, 10:00-10:20

PLGw03 - Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 14 Jan 2008

#### A signal-to-noise analysis of phylogeny estimation by neighbour-joining

Lacey, M (Tulane)

Monday 17 December 2007, 15:30-15:50

PLGw03 - Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Thu 10 Jan 2008

#### A simple model for a complex world

Whelan, S (Manchester)

Thursday 20 December 2007, 11:50-12:10

PLGw03 - Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Tue 15 Jan 2008

#### Adaptive fast convergence - towards optimal reconstruction guarantees for Phylogenetic trees

Gronau, I (Technion)

Monday 17 December 2007, 14:20-14:40

PLGw03 - Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Thu 10 Jan 2008

#### Advances and limitations of maximum likelihood phylogenetics

Gascuel, O (Montpellier)

Tuesday 04 September 2007, 09:00-10:00

PLGw01 - Current Challenges and Problems in Phylogenetics

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Tue 11 Sep 2007

#### Algorithm design for large-scale phylogenetic analysis

Warnow, T (Texas)

Thursday 06 December 2007, 14:00-15:00

Spitalfields Day - Yggdrasil: Reconstructing the Tree of Life

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Thu 13 Dec 2007

#### An empirical study of the effect of sequence alignment on phylogenetic analysis

Blackburne, B (Manchester)

Wednesday 22 June 2011, 15:00-15:20

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 27 Jun 2011

#### An exact algorithm for computing the geodesic distance between phylogenetic trees

Kupczok, A (CIBIV)

Tuesday 18 December 2007, 10:00-10:20

PLGw03 - Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Fri 11 Jan 2008

#### Appropriate models for heterogeneous multi-gene data sites

Holland, B (Massey)

Monday 03 September 2007, 11:50-12:10

PLGw01 - Current Challenges and Problems in Phylogenetics

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Fri 7 Sep 2007

#### Are there alternatives to handling site-to-site rate variation in evolutionary characters

McInerney, JO (National University of Ireland)

Wednesday 22 June 2011, 16:00-17:00

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 27 Jun 2011

#### Assessing the limits of phylogenomics: can too much data be a bad thing?

Bininda-Emonds, O (Carl von Ossietzky Universität Oldenburg)

Friday 24 June 2011, 09:00-10:00

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 27 Jun 2011

#### Big trees: challenges and opportunites in the phylogenetic analysis of large data sets

Rodrigo, AG (Auckland)

Thursday 06 September 2007, 14:00-15:00

PLGw01 - Current Challenges and Problems in Phylogenetics

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 24 Sep 2007

#### Branch and bound construction of balanced minimum evolution optimal trees

Pardi, F (EMBL)

Tuesday 04 September 2007, 15:30-15:50

PLGw01 - Current Challenges and Problems in Phylogenetics

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Thu 13 Sep 2007

#### Coalescent consequences for consensus cladograms

Degnan, J (Michigan)

Friday 21 December 2007, 10:00-10:20

PLGw03 - Future Directions in Phylogenetic Methods and Models

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Tue 15 Jan 2008

#### Coalescent-based Species Tree Inference from Gene Tree Topologies Under Incomplete Lineage Sorting by Maximum Likelihood

Wu, Y (Connecticut)

Thursday 23 June 2011, 10:20-10:40

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Mon 27 Jun 2011

#### Comparing phylogenetic trees

St John, K (New York)

Monday 03 September 2007, 15:50-16:10

PLGw01 - Current Challenges and Problems in Phylogenetics

**Collection**:
Phylogenetics

**Institution**:
Isaac Newton Institute for Mathematical Sciences

**Created**:
Thu 6 Sep 2007